Journal: BMC Genomics

Article Title: Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

doi: 10.1186/s12864-016-3369-8

Figure Lengend Snippet: Characterization of P. clusters enriched for pathogens or saprophytes. Principle component analysis (PCA) based on the presence/absence of species in putative orthologous gene clusters derived from QuartetS analysis. Figure 6a. PCA analysis based on 61 gene clusters enriched for saprophytic species. Figure 6b. PCA analysis based on 163 clusters enriched in pathogens. Figure 6c. Venn diagram showing the distribution of orthologous gene clusters for the two ectomycorrhizal species Tuber melanosporum and Cenococcum geophilum , the saprophyte/ericoid mycorrhizal species Oidiodendron maius as well as P. subalpina . Abbreviations of species are given in Table . Color code: green: mycorrhizal species, red: plant pathogens, purple: soil saprotrophs and blue: P. subalpina

Article Snippet: To explore the unexpectedly large gene set, the proteome was compared to 13 ascomycetous proteomes (Table ) using orthologous cluster analysis, InterPro motif occurrence and a review of Carbohydrate-active enzymes (CAZymes).

Techniques: Derivative Assay

Journal: BMC Genomics

Article Title: Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

doi: 10.1186/s12864-016-3369-8

Figure Lengend Snippet: Number of putative orthologous gene clusters shared by the two mycorrhizal species with the other species included in the analysis

Article Snippet: To explore the unexpectedly large gene set, the proteome was compared to 13 ascomycetous proteomes (Table ) using orthologous cluster analysis, InterPro motif occurrence and a review of Carbohydrate-active enzymes (CAZymes).

Techniques:

Journal: BMC Genomics

Article Title: Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

doi: 10.1186/s12864-016-3369-8

Figure Lengend Snippet: Results of FunCat enrichment analysis for the orthologous gene clusters including P. subalpina that were mainly restricted to pathogenic and saprophytic species

Article Snippet: To explore the unexpectedly large gene set, the proteome was compared to 13 ascomycetous proteomes (Table ) using orthologous cluster analysis, InterPro motif occurrence and a review of Carbohydrate-active enzymes (CAZymes).

Techniques: Control, Protein Binding, Binding Assay